Scholar
Created An Answer That Has Been Accepted
Awarded 5059 times (see all awards). Earned by the
following contributors:
2 years, 10 months ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
2 years, 10 months ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
2 years, 10 months ago
United States
Answer: The number of controls versus treatment in differential expression analysis
2 years, 10 months ago
United States
Answer: Strange error while running DESeq() function.
2 years, 11 months ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
2 years, 11 months ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
3 years ago
United States
Answer: How to solve the "tilted tail" after DESeq2 normalization.
3 years ago
United States
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
3 years ago
United States
Answer: Joint disperstion estimation for DEXSeq and DESeq2
3 years, 1 month ago
United States
Answer: P-values change 100-fold with only a single count changed
3 years, 1 month ago
United States
Answer: DESeq2 - batch, condition and tissue information
3 years, 2 months ago
United States
Answer: DESEQ2 Results log2fold and pvalue changes after removing genes
3 years, 2 months ago
United States
Answer: Which rlog should I use for DESeq2 analysis
3 years, 3 months ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
3 years, 3 months ago
United States
Answer: DESeq2 with multiple variable give me different results
3 years, 3 months ago
United States
Answer: DESeq2 normalization when using with derfinder
3 years, 3 months ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
3 years, 3 months ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
3 years, 4 months ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
3 years, 4 months ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3 years, 4 months ago
United States
Answer: Understanding output of Negative Binomial in DESeq2
3 years, 6 months ago
United States
Answer: Normalizing 5' Nascent RNA-seq data to identify differentially expressed transcr
3 years, 6 months ago
United States
Answer: batch effect and size factor differences: vst vs. rlog
3 years, 6 months ago
United States
Answer: Why does samples order subtly influence the results of DESeq2?
3 years, 6 months ago
United States
Answer: DRIMSeq: many NAs in results compared to DESeq2 ?
3 years, 7 months ago
United States
Answer: DESeq2 with two continuous variable in a design
3 years, 7 months ago
United States
Answer: estimateSizeFactors before or after removing non-coding genes and filtering for
3 years, 7 months ago
United States
Answer: dispersion increasing for extreme high mean counts
3 years, 8 months ago
United States
Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
3 years, 8 months ago
United States
Answer: Concatenating expression counts from different RNA-seq quantification tools
3 years, 8 months ago
United States
Answer: Salmon and DEseq2 - analysis of libraries saturated with ncRNAs
3 years, 8 months ago
United States
Answer: Why does limma want log2 intensities but DESeq2 use raw counts?
3 years, 9 months ago
United States
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
3 years, 9 months ago
United States
Answer: How to retain metadata after running RemoveBatchEffect() after RUVSeq to format
3 years, 9 months ago
United States
Answer: Using DESeq2 to identify changing transcriptional activity in a metagenome
3 years, 10 months ago
United States
Answer: How to reassign DESeqDataSet design to include newly added column to columnData
3 years, 10 months ago
United States
Answer: TxImport when quant.sf files have different index files
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6