Scholar
Created An Answer That Has Been Accepted
Awarded 5074 times (see all awards). Earned by the
following contributors:
3 years ago
United States
Answer: Questions regarding failing tximeta import for swish
3 years, 1 month ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
3 years, 1 month ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
3 years, 1 month ago
United States
Answer: The number of controls versus treatment in differential expression analysis
3 years, 1 month ago
United States
Answer: Strange error while running DESeq() function.
3 years, 2 months ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
3 years, 2 months ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
3 years, 2 months ago
United States
Answer: How to solve the "tilted tail" after DESeq2 normalization.
3 years, 3 months ago
United States
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
3 years, 3 months ago
United States
Answer: Joint disperstion estimation for DEXSeq and DESeq2
3 years, 4 months ago
United States
Answer: P-values change 100-fold with only a single count changed
3 years, 4 months ago
United States
Answer: DESeq2 - batch, condition and tissue information
3 years, 4 months ago
United States
Answer: DESEQ2 Results log2fold and pvalue changes after removing genes
3 years, 5 months ago
United States
Answer: Which rlog should I use for DESeq2 analysis
3 years, 5 months ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
3 years, 6 months ago
United States
Answer: DESeq2 with multiple variable give me different results
3 years, 6 months ago
United States
Answer: DESeq2 normalization when using with derfinder
3 years, 6 months ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
3 years, 6 months ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
3 years, 6 months ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
3 years, 7 months ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3 years, 7 months ago
United States
Answer: Understanding output of Negative Binomial in DESeq2
3 years, 8 months ago
United States
Answer: Normalizing 5' Nascent RNA-seq data to identify differentially expressed transcr
3 years, 9 months ago
United States
Answer: batch effect and size factor differences: vst vs. rlog
3 years, 9 months ago
United States
Answer: Why does samples order subtly influence the results of DESeq2?
3 years, 9 months ago
United States
Answer: DRIMSeq: many NAs in results compared to DESeq2 ?
3 years, 10 months ago
United States
Answer: DESeq2 with two continuous variable in a design
3 years, 10 months ago
United States
Answer: estimateSizeFactors before or after removing non-coding genes and filtering for
3 years, 10 months ago
United States
Answer: dispersion increasing for extreme high mean counts
3 years, 10 months ago
United States
Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
3 years, 11 months ago
United States
Answer: Concatenating expression counts from different RNA-seq quantification tools
3 years, 11 months ago
United States
Answer: Salmon and DEseq2 - analysis of libraries saturated with ncRNAs
3 years, 11 months ago
United States
Answer: Why does limma want log2 intensities but DESeq2 use raw counts?
3 years, 11 months ago
United States
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
3 years, 12 months ago
United States
Answer: How to retain metadata after running RemoveBatchEffect() after RUVSeq to format
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6