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following contributors:
7 years, 7 months ago
United States
DESeq2 batch effect with and without interaction model
7 years, 7 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 7 months ago
United States
DESEQ2: Can we analyse pair of technical replicates as biological replicates to get p-values ? What will be the effect ?
7 years, 7 months ago
United States
[DESeq2] Slight difference between lfcMLE and my calculated log2 fold change
7 years, 7 months ago
United States
Does "FRY gene set tests" is possible using a DESEQ2 style analysis ?
7 years, 7 months ago
United States
Kallisto with tximport gives different results with asymmetrical experimental design
7 years, 7 months ago
United States
DESEQ2 : Analysing PolyA+ & Ribo0 RNASEQ together with batch effect per year
7 years, 7 months ago
United States
Meaning of the intercept when betaPrior is TRUE?
7 years, 7 months ago
United States
DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq data
7 years, 7 months ago
United States
GC/length bias correction in gene expression quantification - Is CQN necessary if using Salmon --GCBias option?
7 years, 7 months ago
United States
Applying replaceOutliers rather than throwing out genes when model includes continuous variable
7 years, 7 months ago
United States
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
7 years, 7 months ago
United States
Normalize to additional variable (brain weight) in DESeq2
7 years, 7 months ago
United States
DESeq2, interpretation of contrasts, effect of non-contrasted conditions
7 years, 7 months ago
United States
Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
7 years, 7 months ago
United States
Can I run DESeq2, if I have repeats for my control, but no repeats for my test condition?
7 years, 7 months ago
United States
DESeq2 batch effect modeling and matrix not full rank
7 years, 7 months ago
United States
DESeq2/SAMSeq - analysing subset of genes from RNASeq dataset
7 years, 7 months ago
United States
how to plot heatmap with in cell type comparison using contrasts.
7 years, 7 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
7 years, 7 months ago
United States
Difference in differentially expressed genes captured from two sets of same sample
7 years, 7 months ago
United States
DESeq2 - selective calculation of differential gene expression
7 years, 7 months ago
United States
all pairwise comparisons, some genes can have zero counts everywhere in a given comparison
7 years, 7 months ago
United States
should I use rsem's summary to genes or tximport's?
7 years, 7 months ago
United States
locfunc position in estimateSizeFactorsForMatrix function
7 years, 7 months ago
United States
How to explain how DESeq2 works to someone with zero bioinformatics background?
7 years, 7 months ago
United States
Estimating cell size factors for single cell RNA-seq data
7 years, 7 months ago
United States
txImport: a gene seems missing from the sample data
7 years, 7 months ago
United States
Using 'tximport' library for downstream DGE after quantifying with Kallisto
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