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Created An Answer That Has Been Accepted
Awarded 5053 times (see all awards). Earned by the
following contributors:
3 years ago
EMBL Heidelberg
Answer: Install package without updating dependent package
3 years ago
Italy
Answer: Problem converting transcript to genomic coordinates with Annotation Hub
3 years ago
United States
Answer: DESEQ2 Results log2fold and pvalue changes after removing genes
3 years ago
Spain
Answer: How to keep cells square in heatplot function of enrichplot
3 years ago
United States
Answer: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
3 years ago
Seattle, WA, United States
Answer: Please allow integers in `numeric` format in `seqlengths`
3 years ago
WEHI, Melbourne, Australia
Answer: Multi-level design RRBS analysis with voomLmFit
3 years, 1 month ago
Austria
Answer: XVector installation fails because zlib.h is not found
3 years, 1 month ago
The city by the bay
Answer: Block weights in scran::pairwiseTTests
3 years, 1 month ago
Seattle, WA, United States
Answer: XVector installation fails because zlib.h is not found
3 years, 1 month ago
Seattle, WA, United States
Answer: S4Vectors, strange metadata behavior
3 years, 1 month ago
United States
Answer: Coding Style for BioC Package submissions: camelCaps or snake_case?
3 years, 1 month ago
Seattle, WA, United States
Answer: `promoters()` fails on `GPos` objects
3 years, 1 month ago
United States
Answer: Which rlog should I use for DESeq2 analysis
3 years, 1 month ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
3 years, 1 month ago
United States
Answer: Extracting fitted expression in limma
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: RMA on different disease labels
3 years, 1 month ago
United States
Answer: DESeq2 with multiple variable give me different results
3 years, 1 month ago
Wageningen University, Wageningen, the …
Answer: gseGO input list
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Advice to use block factor and duplicatecorrelation in RNA-seq experiment
3 years, 1 month ago
San Diego
Answer: Batch effect from to sequencing data at differents depths
3 years, 1 month ago
United States
Answer: Batch effect from to sequencing data at differents depths
3 years, 1 month ago
United States
Answer: Specify hg19 in using biomaRt getBM function
3 years, 1 month ago
WEHI, Melbourne, Australia
Answer: DESeq2/edgeR/limma help with most appropriate design matrix
3 years, 1 month ago
United States
Answer: [recount3] Merge gene counts tables from multiple projects (SRP)
3 years, 1 month ago
United States
Answer: DESeq2 normalization when using with derfinder
3 years, 1 month ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
3 years, 1 month ago
Wageningen University, Wageningen, the …
Answer: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
3 years, 1 month ago
Toulouse, France
Answer: scater::plotHeatmap with swap_rownames gives error
3 years, 2 months ago
EMBL Heidelberg
Answer: Error connecting to external databases through celldex
3 years, 2 months ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
3 years, 2 months ago
United States
Answer: biomart query in R is not matching ensembl website - missing results
3 years, 2 months ago
WEHI, Melbourne, Australia
Answer: edgeR contrasts confusion when multiple groups are involved
3 years, 2 months ago
EMBL Heidelberg
Answer: Problem opening hdf5 files previously created with HDF5Array functions
3 years, 2 months ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
3 years, 2 months ago
Wageningen University, Wageningen, the …
Answer: enrichDGN result can't be visualised by barplot
3 years, 2 months ago
EMBL Heidelberg
Answer: GenomicRanges::union fails on R devel
3 years, 2 months ago
The city by the bay
Answer: Does MNN removes same average batch vector from all cells or each cell has it's
3 years, 2 months ago
San Diego
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3 years, 2 months ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
3 years, 2 months ago
EMBL Heidelberg
Answer: Format roxgen comment (alternative to formatR)
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