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Created An Answer That Has Been Accepted
Awarded 5059 times (see all awards). Earned by the
following contributors:
4 days, 23 hours ago
United States
Answer: Find exact GRanges match keeping metadata columns
1 month ago
United States
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
3 months, 1 week ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
3 months, 3 weeks ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
4 months ago
United States
Answer: Highly DE genes but small count difference within conditions
5 months ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
5 months, 1 week ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
6 months, 1 week ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
6 months, 2 weeks ago
United States
Answer: A question occur when using DESeq2 on a complex design
6 months, 2 weeks ago
United States
Answer: Doubt about model in paired samples (intercept ?)
6 months, 3 weeks ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
8 months, 2 weeks ago
United States
Answer: Slightly different count plots from R and spreadsheet
9 months, 2 weeks ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
9 months, 2 weeks ago
United States
Answer: DESeq2 - dispersion estimation when there is none
10 months, 1 week ago
United States
Answer: DESeq2 , filter and theta arguments in resutlts()
10 months, 4 weeks ago
United States
Answer: With DESeq2 "Not full rank" Error with design
11 months, 2 weeks ago
United States
Answer: evaluate the variable importance on genes
1 year ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
1 year, 2 months ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
1 year, 3 months ago
United States
Answer: DESeq2 unable to handle large count values
1 year, 5 months ago
United States
Answer: Import Salmon data with tximport and pool technical replicates
1 year, 6 months ago
United States
Answer: RNA seq differential expression analysis for large sample size
1 year, 7 months ago
United States
Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
1 year, 9 months ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
1 year, 9 months ago
United States
Answer: DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
1 year, 10 months ago
United States
Answer: Adding cell population estimates as a covariate in DESeq2 differential gene expr
1 year, 10 months ago
United States
Answer: Mistake in Cook's distance calculation in DESeq2 or am I missing something?
1 year, 12 months ago
United States
Answer: Joining different datasets and analyzing using the group-specific condition effe
2 years ago
United States
Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
2 years, 1 month ago
United States
Answer: Normalizing Salmon output count data matrix using DESeq2
2 years, 1 month ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
2 years, 2 months ago
United States
Answer: How to interpret DESeq2's padj after setting lfcThreshold and the log2FC is grea
2 years, 5 months ago
United States
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
2 years, 5 months ago
United States
Answer: DESeq2 contrasts using all relevant samples vs all samples
2 years, 5 months ago
United States
Answer: Log2FC values slightly higher in some genes after DESeq2 shrinkage
2 years, 6 months ago
United States
Answer: Contradictory results in smallRNA differential expression analysis using DESeq2
2 years, 6 months ago
United States
Answer: Can I use limma::avereps to remove dupicated genes before conduct DEG based on R
2 years, 10 months ago
United States
Answer: Questions regarding failing tximeta import for swish
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