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1 year, 6 months ago
USA, Los Angeles, USC
GOstats - subsetting termGraphs with terms from the html report and missing nodes
1 year, 9 months ago
USA, Los Angeles, USC
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
2 years, 7 months ago
USA, Los Angeles, USC
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
3 years, 1 month ago
USA, Los Angeles, USC
Processing Nanostring GeoMX Q3 normalized data as intensities with Limma
5 years, 4 months ago
USA, Los Angeles, USC
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
5 years, 5 months ago
USA, Los Angeles, USC
Combining and using 10x Genomics output in SingleCellExperiment Objects
5 years, 5 months ago
USA, Los Angeles, USC
Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
5 years, 5 months ago
USA, Los Angeles, USC
Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into DropletUtils
5 years, 6 months ago
USA, Los Angeles, USC
What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
6 years, 5 months ago
USA, Los Angeles, USC
Importing RMA processed data into limma for eBayes
6 years, 5 months ago
USA, Los Angeles, USC
Potential bug in package("rtracklayer") undefined symbol regcompA
6 years, 5 months ago
USA, Los Angeles, USC
Bioconductor Digest, Vol 121, Issue 13
6 years, 5 months ago
USA, Los Angeles, USC
Annotation of DEXSeqHTML with biomaRt
7 years, 11 months ago
USA, Los Angeles, USC
Importing RMA processed data into limma for eBayes
7 years, 11 months ago
USA, Los Angeles, USC
What is the easiest way to make the GC content and length matrix for package cqn?
7 years, 11 months ago
USA, Los Angeles, USC
Figuring out what long decent Phred value unaligned reads are
10 years, 2 months ago
USA, Los Angeles, USC
xps - error in normalize - "Error: Length of non-varying units is zero."
10 years, 2 months ago
USA, Los Angeles, USC
Limma design and contrast matrix question.
10 years, 3 months ago
USA, Los Angeles, USC
External RNA controls on Rat Gene ST 2.0 chip lfc ~ 1 after xps rma??
10 years, 3 months ago
USA, Los Angeles, USC
VSN with spike-in probes question
10 years, 6 months ago
USA, Los Angeles, USC
VSN after xps with RaGene2.0ST chips - is there a way to keep an identifier?
10 years, 7 months ago
USA, Los Angeles, USC
Is there an expected coefficient of variation for the hybridization probe intensities among technical replicates?
10 years, 8 months ago
USA, Los Angeles, USC
Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.
11 years, 6 months ago
USA, Los Angeles, USC
Bioconductor Digest, Vol 121, Issue 29
11 years, 6 months ago
USA, Los Angeles, USC
I was wondering if anyone here was using SPP?
11 years, 7 months ago
USA, Los Angeles, USC
Bioconductor Digest, Vol 120, Issue 12
11 years, 10 months ago
USA, Los Angeles, USC
Normalizing affymetrix chips with ERCC
11 years, 10 months ago
USA, Los Angeles, USC
Normalization of Affymetrix microarray data with spike-in hybridization controls?
11 years, 11 months ago
USA, Los Angeles, USC
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
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