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jovel_juan ▴ 30
1 year, 3 months ago
Canada
object HPOGENE is not exported by namespace HPO.db
nhaus ▴ 70
1 year, 3 months ago
Switzerland
getLDS causes "biomaRt has encountered an unexpected server error"
jonas.freimuth ▴ 20
1 year, 3 months ago
Germany
[Bug] Segfault in edgeR::cpm
shepherl 4.1k
1 year, 3 months ago
United States
Important Bioconductor Release 3.18 deadlines this week
mat149 ▴ 80
1 year, 3 months ago
United States
Help with orgdb for non-model species via makeOrgPackageFromNCBI
Ankit ▴ 20
1 year, 4 months ago
Italy
Blood cell composition adjustment in methylation EPIC array: ChAMP
Weiqian ▴ 10
1 year, 4 months ago
United States
Questions about the false positives indicated by DESeq2 and QQ plot
nromerov • 0
1 year, 4 months ago
Colombia
Biostrings error at retrieving protein sequences
Daniel E. Weeks ▴ 30
1 year, 4 months ago
Pittsburgh, Pennsylvania, United States…
Gviz: UcscTrack and "GC Percent" information
Gregory • 0
1 year, 4 months ago
United States
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Jonathan ▴ 10
1 year, 4 months ago
United States
Phenotype effect - building a contrast matrix - grouping vs interaction
Jitendra ▴ 10
1 year, 4 months ago
United Kingdom
DMRcate design
Dario Strbenac ★ 1.5k
1 year, 4 months ago
Australia
DataFrame Construction With Non-standard Column
Koki ▴ 10
1 year, 4 months ago
Japan
Speeding up of DelayedArray::write_block()
Dario Strbenac ★ 1.5k
1 year, 4 months ago
Australia
Matching Variants Between Two VCF Objects
shepherl 4.1k
1 year, 4 months ago
United States
List of Deprecated Packages for Bioc3.18
gingergeiger22 • 0
1 year, 4 months ago
United States
TPM from STAR mapped counts
Vitor • 0
1 year, 5 months ago
United States
Import Salmon data with tximport and pool technical replicates
ZheFrench ▴ 60
1 year, 5 months ago
France
Format roxgen comment (alternative to formatR)
richardallenfriedmanbrooklyn ▴ 30
1 year, 5 months ago
United States
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
shepherl 4.1k
1 year, 5 months ago
United States
Bioconductor 3.18 Release Schedule
Gordon Smyth 52k
1 year, 5 months ago
WEHI, Melbourne, Australia
Read data file containing both counts and annotation into edgeR
hayleyw • 0
1 year, 5 months ago
Canada
How long does it usually take to complete dream() from start to finish?
Lucy ▴ 60
1 year, 5 months ago
United Kingdom
Applicability of AUCell to bulk RNA-seq
nhaus ▴ 70
1 year, 5 months ago
Switzerland
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
Gerhard Thallinger ▴ 180
1 year, 5 months ago
Austria
Rsubread: subjunc() loads index repeatedly
Sara • 0
1 year, 6 months ago
Belgium
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
Eva ▴ 10
1 year, 6 months ago
Spain
lfcShrink() and batch effects in DESeq2
martin.grigorov ▴ 10
1 year, 6 months ago
Bulgaria
ASpli checks fail on Linux due to missing dependency to statmod
Jonathan ▴ 10
1 year, 6 months ago
United States
Adding a group of samples reduces DEGs in other groups
Jonathan ▴ 10
1 year, 6 months ago
United States
Limma multi-group, nested analysis with aggregation
bpshtiwan ▴ 10
1 year, 6 months ago
Iraq
Error in Create switchAnalyzeRlist
Chris ▴ 20
1 year, 6 months ago
United States
Help with error DiffBind
Sam ▴ 10
1 year, 6 months ago
Jerusalem
DiffBind does not use DESeq2 MLE estimation of fold change
rae.alshammari ▴ 10
1 year, 6 months ago
United States
Warning messages in detecting P-values
chiwut.wong • 0
1 year, 6 months ago
United States
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
bhandary.8590 ▴ 20
1 year, 6 months ago
United States
Question regarding lfcShrink types in DiffBind
Luca • 0
1 year, 6 months ago
Italy
RNA seq differential expression analysis for large sample size
Jonathan ▴ 10
1 year, 6 months ago
United States
Grouping DEGs yields varying results
mohammedtoufiq91 ▴ 10
1 year, 6 months ago
United States
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
Chris ▴ 20
1 year, 6 months ago
United States
Reading data into chromVAR
smac_head • 0
1 year, 6 months ago
United Kingdom
DESeq2, time-course interpretation
maltethodberg ▴ 180
1 year, 7 months ago
Denmark
rowsum or similar for RleArray?
Jonathan ▴ 10
1 year, 7 months ago
United States
Gene set analysis: GSVA, Z-Score, and fold-changes
abhisek001 • 0
1 year, 7 months ago
India
Query regarding to create custom organism database with AnnotationForge package (AnnotationForge::makeOrgPackageFromNCBI)
bhandary.8590 ▴ 20
1 year, 7 months ago
United States
DESeq2 lfcShrink function used in DiffBind package
Chris ▴ 20
1 year, 7 months ago
United States
Interpret plots from DiffBind
Theo ▴ 10
1 year, 7 months ago
Germany
ranking the DeSeq2 results using t-values?
Anna ▴ 20
1 year, 7 months ago
Germany
decideTests vs topTable results
Lluís Revilla Sancho ▴ 760
1 year, 7 months ago
European Union
runPCA in a SingleCellExperiment results ina colMeans error
8,288 results • Page 3 of 166
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