Bioconductor Forum

Created A Question With More Than 1,000 Views

Awarded 8529 times (see all awards). Earned by the following contributors:

barrypraveen • 0

3 years, 9 months ago

Czechia

what is the difference between iBAQ or LFQ?

etiennedanis • 0

3 years, 9 months ago

United States

DiffBind dba.report(): Question about DBA_ALL_METHODS

etiennedanis • 0

3 years, 9 months ago

United States

ChIPQC: log2 or log10?

Bogdan ▴ 670

3 years, 9 months ago

Palo Alto, CA, USA

about MapIds function

pcantalupo ▴ 10

3 years, 9 months ago

United States

package to manipulate GTF files

Konstantinos Yeles ▴ 80

3 years, 9 months ago

Italy

Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --- failure: length > 1 in coercion to logical --- --- srcref ---

AZ ▴ 30

3 years, 9 months ago

United Kingdom

A permanent error in DESeq2

adR ▴ 40

3 years, 9 months ago

Germany, München

Unable to install SSPA packages

luca.s ▴ 50

3 years, 9 months ago

Italy

matrix with Salmon gene-level quantifications in DESeq

luca.s ▴ 50

3 years, 9 months ago

Italy

importing RSEM isoform to Gene Name with tximport

najib • 0

3 years, 9 months ago

South Korea

extract fold change of a list of gene from EdgeR?

erik.burchard • 0

3 years, 9 months ago

United States

Spline-fitted data analysis in edgeR question

shepherl 4.1k

3 years, 10 months ago

United States

Bioconductor 2021 Scholarship and Caregiver Awards

jarod ▴ 30

3 years, 10 months ago

United States

limma - contrast matrix hypothesis testing

robledoj13 • 0

3 years, 10 months ago

United States

EnhancedVolcano Label Question

linouhao ▴ 20

3 years, 10 months ago

United States

deseq2 normalized data with heatmap

najib • 0

3 years, 10 months ago

South Korea

change text size in plotmd functtion

xiaofeiwang18266 ▴ 60

3 years, 10 months ago

Singapore

how to plot multiple RLEs on same plot?

Basti ▴ 780

3 years, 10 months ago

France

Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis

Gordon Smyth 52k

3 years, 10 months ago

WEHI, Melbourne, Australia

Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia

Lucy ▴ 60

3 years, 10 months ago

United Kingdom

Negative binomial fitting DESeq2

zuljiamel1991 ▴ 10

3 years, 10 months ago

Germany

installing older versions of packages

jbono ▴ 10

3 years, 10 months ago

United States

Differential Transcript Usage: complex factorial design

Pedro Baldoni ▴ 40

3 years, 10 months ago

Pittsburgh, United States

Block processing matrices of different dimensions with DelayedArray

Pedro Baldoni ▴ 40

3 years, 10 months ago

Pittsburgh, United States

Processing time of blockApply and DelayedArray

Jon Bråte ▴ 260

3 years, 10 months ago

Norway

How to run getSeq() on a GRanges object with invalid DNA letters?

vanbelj ▴ 30

3 years, 10 months ago

United States

Subtracting Background Signal Before DESeq Analysis

Henrik Bengtsson ★ 2.4k

3 years, 10 months ago

United States

SITE: "Your IP has made too many requests to the site" - who to contact?

gprezza • 0

3 years, 10 months ago

Germany

EDASeq normalization: genes with 0 counts

Dario Strbenac ★ 1.6k

3 years, 10 months ago

Australia

Convert DataFrame to data.frame While Keeping Column Name Syntax

Dario Strbenac ★ 1.6k

3 years, 10 months ago

Australia

DataFrame or DFrame

mario.keller.1988 ▴ 20

3 years, 10 months ago

Germany

Correlation analyses on TCGA data

richardallenfriedmanbrooklyn ▴ 30

3 years, 11 months ago

United States

could not duplicate the fragment length in "Reads to Regions" csaw tutorial

GA ▴ 10

3 years, 11 months ago

United States

Plotting FPKM

Koki ▴ 10

3 years, 11 months ago

Japan

"dim<-" against on-disk arrays

Gian ▴ 30

3 years, 11 months ago

Italy

DESeqDataSetFromMatrix

shepherl 4.1k

3 years, 11 months ago

United States

Nominations for Bioconductor 2021 Awards!

Ahdee ▴ 60

3 years, 11 months ago

United States

How to filter EnsDb into another EnsDb object instead of GRange?

rohitsatyam102 ▴ 20

3 years, 11 months ago

India

Error in conversion of SCE object to Seurat Object.

rodrigo.duarte88 ▴ 40

3 years, 11 months ago

United States

Concatenating expression counts from different RNA-seq quantification tools

Jane ▴ 10

3 years, 11 months ago

United States

DESeq2 numbers of DEGs not consistent with PCA plot

shepherl 4.1k

3 years, 11 months ago

United States

Bioconductor 3.13 is Released!

Bine ▴ 50

3 years, 11 months ago

ColData use only certain variable within

GlycineMax • 0

3 years, 11 months ago

United States

Number of DEGs with adj pvalue < 0.05

Sam ▴ 10

3 years, 11 months ago

Jerusalem

Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?

Yuan Tian ▴ 290

3 years, 11 months ago

United Kingdom

DiffBind Normalisation between Narrow/Broad Peaks from different peak callers

Dario Strbenac ★ 1.6k

3 years, 11 months ago

Australia

MutationalPatterns Signature Database Versions

chiwut.wong • 0

3 years, 11 months ago

United States

Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA

svlachavas ▴ 840

3 years, 11 months ago

Germany/Heidelberg/German Cancer Resear…

Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols

Habil Zare ▴ 200

3 years, 11 months ago

United States/Austin Area

colMax is not exported from the xcms package

8,529 results • Page 14 of 171

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