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3 years, 10 months ago
Singapore
Does DESeq2 need "scale_counts" for GTEx and TCGA data from recount2 (TCGAquery_recount2)?
3 years, 10 months ago
India
How to save multiple assays and subsequent processed data in single SummarizedExperiment Object
3 years, 10 months ago
Singapore
error reading from connection (Error in load(url(con)))
3 years, 10 months ago
Germany
Retrieve gene description with ensembldb
3 years, 10 months ago
United States
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
3 years, 10 months ago
United States
How do I set up a contrast matrix in edgeR with makeContrasts, when a relevant level was dropped?
3 years, 10 months ago
Jerusalem
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
3 years, 10 months ago
Jerusalem
Using DiffBind blacklists and greylists with results mapped to BDGP6
3 years, 11 months ago
United States
Alternative splicing analysis in edgeR: duplicate exons
3 years, 11 months ago
Rijnsburg
Pheatmap/Complexheatmap: making a continuous color scale with NAs
3 years, 11 months ago
European Union
Multi-level comparisons with paired data: duplicateCorrelation or not?
3 years, 11 months ago
United States
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
3 years, 11 months ago
Germany
Error in GenomicAlignments::summarizeOverlaps: attempt to select less than one element in OneIndex
3 years, 11 months ago
Rijnsburg
Differential protein/biomarker expression using limma: is that possible?
3 years, 11 months ago
United States
ComplexHeatmap: setting column_order changes plotted values
3 years, 11 months ago
Jerusalem
An attempt to better understand DESeq2 dispersion estimation
3 years, 11 months ago
United Kingdom
Sparsity plot and how that indicates a model fit to negative binomial distribution
3 years, 11 months ago
United States
Log2FoldChange shrinkage method in DESeq2
3 years, 11 months ago
United States
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
3 years, 11 months ago
India
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
3 years, 11 months ago
University of Chicago
Produce quantile normalized expression values for use with BatchQC
3 years, 11 months ago
Canada
DiffBind analysis for ATAC-Seq error Error processing one or more read files
3 years, 12 months ago
Worcester
Question about nearest function in R package IRanges
3 years, 12 months ago
3 years, 12 months ago
USA
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
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