Popular Question
Created A Question With More Than 1,000 Views
Awarded 8081 times (see all awards). Earned by the
following contributors:
1 week, 5 days ago
Finland
Differential Expression Analysis with unbalanced batches without replication between conditions
2 weeks ago
Wageningen University, Wageningen, the …
incomplete official symbol mitochondrial genes in org.Hs.eg.db?
2 weeks, 1 day ago
Spain
Question about using LRT test for time course experiments with DESeq2
2 weeks, 4 days ago
Australia
Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
3 weeks, 3 days ago
Denmark
Zero intra-block correlation in RRBS analysis using voomLmFit with block
4 weeks ago
United Kingdom
LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means Parameterization
1 month ago
United Kingdom
More regions in union when increasing DBA$config$mergeOverlap
1 month, 1 week ago
United Kingdom
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
1 month, 3 weeks ago
Norway
WGCNA: minModuleSize is not responding correctly
1 month, 4 weeks ago
Barcelona/Universitat Pompeu Fabra
Research software engineer at UPF Barcelona
2 months ago
Pakistan
Error in GOmeth function of missMethyl when EPICv2 annotation is used
2 months ago
France
clusterProfiler: BgRatio N value does not match the size of the gene universe that has GO annotations.
2 months, 1 week ago
South Korea
[DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Application
3 months ago
India
What is the importance of `--countReadPairs` in featureCounts on paired end data?
3 months, 1 week ago
Turkey
Deseq2 design formula and analysis with internal controls
3 months, 3 weeks ago
Australia
Postdoc/RA position: Software Engineer For R and High-Performance Computing
4 months ago
United Kingdom
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
4 months, 1 week ago
India
Query regarding phyloseq object construct with QIIME output
4 months, 1 week ago
United States
Inconsistent nullp and goseq enrichment results across operating systems
4 months, 2 weeks ago
United States
limma comparison for small sample size and how to get covariance matrix
4 months, 3 weeks ago
United States
Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment.
4 months, 4 weeks ago
India
Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
5 months, 1 week ago
Wageningen University, Wageningen, the …
Cannot install oligo on Fedora
6 months, 2 weeks ago
United States
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
6 months, 3 weeks ago
United States
Why p value inconsistent when using different number of pathway score?
7 months ago
WEHI, Melbourne, Australia
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
7 months ago
Ireland
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
7 months ago
United States
Light difference when using coef vs omit a group when compare 3 groups.
7 months, 2 weeks ago
United States
How to make boxplot with pairwise and overall p value from Limma
7 months, 2 weeks ago
United States
The difference when using Limma compare between 3 conditions vs 2 conditions
7 months, 3 weeks ago
United States
How to get DMR for Infinium methylation EPIC v2
8 months ago
Germany
Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
8 months, 3 weeks ago
Canada
How to calculate p value when comparing two sets of DEGs and not applying interaction
9 months ago
United States
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
9 months, 3 weeks ago
United States
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
10 months, 1 week ago
Italy
RNAseq paired-sample differantial expression analysis with many samples
10 months, 2 weeks ago
Brazil
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
11 months, 1 week ago
UK
JoinLayers function for Seurat Object for annotation with SingleR
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6