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Created A Post With More Than 5 Votes
Awarded 394 times (see all awards). Earned by the
following contributors:
4 years, 1 month ago
The city by the bay
A: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
4 years, 1 month ago
The city by the bay
A: Confounded design, batch effect correction (edgeR)
4 years, 1 month ago
The city by the bay
A: cameraPR vs geneSetTest and ROAST/CAMERA in general
4 years, 1 month ago
The city by the bay
A: Downstream analysis after using mnnCorrect()
4 years, 1 month ago
The city by the bay
A: LogFC: how do you determine the cutoff for differentially expressed genes?
4 years, 1 month ago
The city by the bay
A: Adjust for multiple batches using combat
4 years, 1 month ago
The city by the bay
A: DE for genes with very low counts using limma.
4 years, 1 month ago
The city by the bay
A: Is Limma's removeBatchEffect() and log2() commutative?
4 years, 1 month ago
The city by the bay
A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
4 years, 1 month ago
The city by the bay
A: Continuous variable interaction with Groups in design matrix
4 years, 1 month ago
The city by the bay
A: How to determine which edgeR glmFit and glmQLFit are better
4 years, 1 month ago
The city by the bay
A: Allele Specific Expression in DESeq2 or EdgeR
4 years, 1 month ago
The city by the bay
A: limma Time Course Experiment with many time points
4 years, 1 month ago
The city by the bay
A: Using limma when continuous and categorical confounders are present at the same
4 years, 1 month ago
The city by the bay
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
5 years, 10 months ago
The city by the bay
differential expression analysis of htseq data with edgeR/voom
5 years, 10 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
5 years, 10 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 2 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 2 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 2 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 2 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 2 months ago
The city by the bay
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
6 years, 3 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 6 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 6 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
6 years, 6 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 5 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
7 years, 5 months ago
The city by the bay
goana limma- extract list of DE genes and genes in the enriched GO terms?
7 years, 5 months ago
The city by the bay
Combining newer/older RNAseq data, batch correcting
7 years, 5 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
7 years, 5 months ago
The city by the bay
DE for genes with very low counts using limma.
7 years, 5 months ago
The city by the bay
Continuous variable interaction with Groups in design matrix
7 years, 5 months ago
The city by the bay
Is there are better way to improve the design via blocking or contrasts while using limma-voom for the mentioned datasets?
7 years, 5 months ago
The city by the bay
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
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