Bioconductor Forum

Pauly Lin ▴ 160

9 years, 6 months ago

University of New South Wales, Australia

Removing continuous covariate effects in limma analysis

Mark Dunning ★ 1.1k

9 years, 6 months ago

Sheffield, Uk

European Bioconductor Developers Meeting: Cambridge 7/8th December 2015

Kasper Daniel Hansen ★ 6.5k

9 years, 7 months ago

United States

Bioconductor on Coursera

daniel.silvestre ▴ 100

9 years, 8 months ago

Brazil

How to properly sort GRanges?

Hervé Pagès 16k

9 years, 9 months ago

Seattle, WA, United States

annotatePeak() in ChIPseeker - how long does it take to run?

Sonali Arora ▴ 390

9 years, 9 months ago

United States

Epigenomics RoadMap Project files now accessible via AnnotationHub

Sean Davis 21k

9 years, 9 months ago

United States

differential gene expression

Aaron Lun ★ 28k

9 years, 9 months ago

The city by the bay

How to make contrast table to combine two conditions/treatments against another one (in a multi groups experiments

Aaron Lun ★ 28k

9 years, 9 months ago

The city by the bay

How to make contrast table to combine two conditions/treatments against another one (in a multi groups experiments

Gordon Smyth 52k

9 years, 9 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Gordon Smyth 52k

9 years, 9 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Martin Morgan 25k

9 years, 9 months ago

United States

Introduction to Bioconductor for high-throughput sequence analysis

scott.walmsley ▴ 60

9 years, 10 months ago

United States

CAMERA error: $ operator not defined for this S4 class

James W. MacDonald 68k

9 years, 10 months ago

United States

Limma - discrepancy in number of significant genes

James W. MacDonald 68k

9 years, 10 months ago

United States

Limma - discrepancy in number of significant genes

Martin Morgan 25k

9 years, 10 months ago

United States

Mapping genome regions to gene symbols

Thomas Maurel ▴ 800

9 years, 10 months ago

United Kingdom

Ensembl release 80 is out!

Gordon Smyth 52k

9 years, 10 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Dan Tenenbaum ★ 8.2k

9 years, 10 months ago

United States

Recent course materials now easily searchable

Dan Tenenbaum ★ 8.2k

9 years, 10 months ago

United States

Recent course materials now easily searchable

Sonali Arora ▴ 390

9 years, 11 months ago

United States

Epigenomics RoadMap Project files now accessible via AnnotationHub

Thomas Maurel ▴ 800

9 years, 11 months ago

United Kingdom

Ensembl release 80 is out!

Martin Morgan 25k

9 years, 11 months ago

United States

Searching the archives

Gordon Smyth 52k

10 years ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Gordon Smyth 52k

10 years, 2 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Bernd Fischer ▴ 550

10 years, 2 months ago

Germany / Heidelberg / DKFZ

voom for spectral counts

Dan Tenenbaum ★ 8.2k

10 years, 2 months ago

United States

Recent course materials now easily searchable

Simon Anders ★ 3.8k

10 years, 3 months ago

Zentrum für Molekularbiologie, Universi…

DEXSeq Usage and Expression Confusion

salahm ▴ 70

10 years, 4 months ago

DESeq2 - Acquiring batch-corrected values for PCA and hierarchical clustering

Sean Davis 21k

10 years, 4 months ago

United States

differential gene expression

Wei Shi ★ 3.6k

10 years, 5 months ago

Australia/Melbourne

Experimental data package 'seqc'

Dan Tenenbaum ★ 8.2k

10 years, 5 months ago

United States

Bioconductor 3.0 is released!

Dan Tenenbaum ★ 8.2k

10 years, 6 months ago

United States

Recent course materials now easily searchable

Valerie Obenchain ★ 6.8k

10 years, 6 months ago

United States

October Newsletter now available

Gordon Smyth 52k

10 years, 6 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Steve Lianoglou ★ 13k

10 years, 7 months ago

United States

Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis

Gordon Smyth 52k

10 years, 7 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Dan Tenenbaum ★ 8.2k

10 years, 7 months ago

United States

Recent course materials now easily searchable

Martin Morgan 25k

10 years, 7 months ago

United States

Searching the archives

Michael Love 43k

10 years, 7 months ago

United States

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Guest User ★ 13k

10 years, 7 months ago

heatmap.2() get matrix after hierarchical clustering

John Blischak ▴ 190

10 years, 7 months ago

using duplicateCorrelation with limma+voom for RNA-seq data

Charity Law ▴ 90

11 years, 11 months ago

Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?

Xie, Zhi NIH/NHLBI [E] ▴ 120

14 years, 6 months ago

remove microarray batch effects using Limma