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Created A Post With More Than 5 Votes
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following contributors:
7 years, 10 months ago
United States
what is the difference between "pd.mogene.2.0.st" and "mogene20sttranscriptcluster.db"?
7 years, 10 months ago
United States
Best way to convert uniprot accessions to entrez gene identifiers in R
7 years, 10 months ago
United States
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
7 years, 10 months ago
United States
Best method/package for Gene Set Enrichment Analysis in microarrays?
7 years, 10 months ago
United States
edX online course introducing Bioconductor now up and running
7 years, 10 months ago
The city by the bay
goana limma- extract list of DE genes and genes in the enriched GO terms?
7 years, 10 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 10 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
7 years, 10 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
7 years, 10 months ago
The city by the bay
Combining newer/older RNAseq data, batch correcting
7 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
7 years, 10 months ago
The city by the bay
DE for genes with very low counts using limma.
7 years, 10 months ago
The city by the bay
Continuous variable interaction with Groups in design matrix
7 years, 10 months ago
The city by the bay
Is there are better way to improve the design via blocking or contrasts while using limma-voom for the mentioned datasets?
7 years, 10 months ago
The city by the bay
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
7 years, 10 months ago
The city by the bay
Differential expression analysis - additive genetic model (how to implement it)
7 years, 10 months ago
The city by the bay
duplicateCorrelation and Pearson Correlation
7 years, 10 months ago
The city by the bay
limma Time Course Experiment with many time points
7 years, 10 months ago
United States
Introduction to Bioconductor for high-throughput sequence analysis
7 years, 10 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
7 years, 10 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
7 years, 10 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
7 years, 10 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
7 years, 10 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
7 years, 10 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
7 years, 10 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 10 months ago
Seattle, WA, United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 10 months ago
United States
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
7 years, 10 months ago
United States
DESeq2 multiple interaction terms 3-factor design
7 years, 10 months ago
United States
How to explain how DESeq2 works to someone with zero bioinformatics background?
7 years, 10 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
7 years, 10 months ago
United States
What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
7 years, 10 months ago
United Kingdom / London / Francis Crick…
extracting the genes associated with the clusters
7 years, 10 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
7 years, 10 months ago
EMBL European Molecular Biology Laborat…
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
7 years, 10 months ago
Italy
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
7 years, 10 months ago
Italy
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
7 years, 10 months ago
EMBL Heidelberg
R: error while reading .h5 files from R using rdhf5 package
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